Chocolate Bourbon Pecan Pie Cupcakes with Butter Pecan Frosting are the perfect fusion of rich chocolate, crunchy pecans, and a splash of bourbon. These delightful cupcakes are a showstopper at any fall gathering, offering an irresistible combination of flavors that will leave your guests coming back for more. The soft, moist chocolate bourbon-infused cake pairs beautifully with a decadent, homemade pecan pie filling and a creamy butter pecan frosting, creating a flavor profile that’s both comforting and sophisticated.
If you’re a fan of bourbon pecan cupcakes, pecan pie cupcakes, or chocolate pecan desserts, then this recipe is a must-try! The fall season is the perfect time to indulge in these rich and flavorful treats, so let’s dive into how to make this showstopper dessert.
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Why You’ll Love These Chocolate Bourbon Pecan Pie Cupcakes

There are a lot of reasons why these cupcakes should be your go-to dessert for fall gatherings, dinner parties, or even just a cozy night in:
- Bourbon-infused cupcakes: The combination of bourbon and coffee adds a deep, complex flavor to the chocolate cake, making it stand out from your regular chocolate cupcakes.
- Pecan pie filling: The gooey pecan pie filling adds a delightful surprise in the middle, blending perfectly with the chocolate bourbon cake.
- Buttery, nutty frosting: The butter pecan frosting is creamy, with just the right amount of sweetness, making every bite irresistible.
- Perfect for fall: These cupcakes bring the flavors of autumn together in one bite cinnamon, toasted pecans, and rich maple syrup.
So if you’re craving fall cupcake recipes that are a little outside the box, look no further than these bourbon-infused desserts. Trust me; they’re a crowd favorite!
Ingredients for Chocolate Bourbon Pecan Pie Cupcakes
Pecan Pie Filling
- 3 cups raw pecans
- 2 tablespoons bourbon
- 3 teaspoons vanilla extract
- 1/2 cup + 2 tablespoons packed light or dark brown sugar
- 1/2 teaspoon ground cinnamon
- 4 large egg yolks
- 1/4 cup cornstarch
- 3/4 cup real maple syrup
Bourbon Chocolate Cupcakes
- 1 cup melted coconut oil
- 1/2 cup bourbon (see notes)
- 1/2 cup strong black coffee or water
- 2 large eggs, at room temperature
- 2/3 cup plain Greek yogurt, at room temperature
- 1 cup granulated sugar
- 2 cups all-purpose flour
- 3/4 cup unsweetened cocoa powder
- 1 1/2 teaspoons baking soda
- 3/4 teaspoon kosher salt
Butter Pecan Frosting
- 2 sticks (16 tablespoons) salted butter, at room temperature
- 1/2 cup heavy cream
- 1 cup packed brown sugar
- 1 tablespoon vanilla extract
- 3 cups powdered sugar
How to Make Chocolate Bourbon Pecan Pie Cupcakes

Step 1: Toast the Pecans for the Filling
Preheat your oven to 350°F (175°C). Line a baking sheet with parchment paper.
On the baking sheet, combine the pecans, 2 tablespoons of bourbon, 1 teaspoon of vanilla extract, 2 tablespoons of brown sugar, and cinnamon. Bake for 8-10 minutes until the pecans are toasted and fragrant. Once toasted, sprinkle with sea salt and roughly chop the pecans, keeping 22 whole pecans aside for decoration.
Step 2: Make the Pecan Pie Filling
In a large pot, whisk together the egg yolks, cornstarch, and 1 tablespoon of water until smooth. Add 1/2 cup of brown sugar, maple syrup, and a pinch of salt. Place the pot over medium-high heat and cook, stirring constantly, for 5-8 minutes until the mixture thickens. Remove from heat and strain through a fine mesh sieve into a heatproof bowl. Stir in about 1 cup of chopped toasted pecans and 2 teaspoons of vanilla extract. Cover and chill in the fridge for about an hour to set.
Step 3: Prepare the Chocolate Bourbon Cupcakes
While the pecan pie filling chills, it’s time to make the cupcakes. Preheat the oven to 350°F (175°C) and line 20-22 cupcake molds with paper liners.
In a stand mixer, beat together the melted coconut oil, bourbon, coffee or water, eggs, yogurt, and granulated sugar until well combined. Add the flour, cocoa powder, baking soda, and kosher salt. Mix until the batter is smooth and lump-free.
Divide the batter evenly among the prepared cupcake pans and bake for 18-22 minutes, until the tops are set and a toothpick comes out clean. Remove from the oven and allow the cupcakes to cool.
Step 4: Make the Butter Pecan Frosting
In a medium saucepan, melt 4 tablespoons of butter, the cream, and brown sugar over medium heat. Bring to a boil, and cook for one minute, or until the sugar has dissolved. Remove from heat and transfer to the bowl of your stand mixer. Place the bowl in the freezer for about 15-20 minutes, until the mixture is cool to the touch.
Once cool, add the remaining 12 tablespoons of butter, vanilla extract, and powdered sugar to the bowl. Beat until well combined and smooth. Stir in 1/2-1 cup of finely chopped toasted pecans.
Step 5: Assemble the Cupcakes
Once the cupcakes have cooled, use a paring knife to cut a cone-shaped piece from the center of each cupcake. Fill the hole with the chilled pecan pie filling. Frost each cupcake with the butter pecan frosting and sprinkle with the remaining chopped pecans. Top each cupcake with a reserved whole pecan.
FAQ About Chocolate Bourbon Pecan Pie Cupcakes
Can I make these cupcakes ahead of time?
Yes! You can bake and assemble the cupcakes a day ahead of time. Just store them in an airtight container in the fridge, and frost them right before serving to maintain freshness.
Can I use a different type of alcohol for these cupcakes?
Absolutely! If you prefer not to use bourbon, you can substitute it with dark rum or even brandy. Both will give the cupcakes a similar rich, deep flavor.
Can I make the pecan pie filling without bourbon?
Yes, you can omit the bourbon. Add a little extra vanilla extract or maple syrup to keep the filling rich and flavorful.
How long can I store these cupcakes?
These cupcakes are best consumed within 3-4 days. Store them in an airtight container in the fridge due to the pecan pie filling.

Conclusion
There you have it, Chocolate Bourbon Pecan Pie Cupcakes with Butter Pecan Frosting that bring together the best of both worlds: chocolate and pecan pie! Whether you’re baking for a special occasion or simply treating yourself to a luxurious dessert, these cupcakes are sure to impress. The depth of flavor from the bourbon, the toasted pecans, and the rich, creamy frosting will have everyone reaching for seconds.
Give this recipe a try, and let the autumn flavors fill your kitchen with warmth and comfort.
Don’t forget to save this recipe to Pinterest so you can make it again and again.
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Chocolate Bourbon Pecan Pie Cupcakes with Butter Pecan Frosting
- Total Time: 1 hour 10 minutes
- Yield: 22 cupcakes 1x
Description
Decadent chocolate bourbon cupcakes filled with gooey pecan pie filling and topped with rich butter pecan frosting — a show-stopping dessert perfect for any special occasion.
Ingredients
- Pecan Pie Filling
- 3 cups raw pecans
- 2 tablespoons bourbon
- 3 teaspoons vanilla extract
- 1/2 cup + 2 tablespoons packed light or dark brown sugar
- 1/2 teaspoon ground cinnamon
- 4 large egg yolks
- 1/4 cup cornstarch
- 3/4 cup real maple syrup
- Bourbon Chocolate Cupcakes
- 1 cup melted coconut oil
- 1/2 cup bourbon
- 1/2 cup strong black coffee or water
- 2 large eggs, at room temperature
- 2/3 cup plain Greek yogurt, at room temperature
- 1 cup granulated sugar
- 2 cups all-purpose flour
- 3/4 cup unsweetened cocoa powder
- 1 1/2 teaspoons baking soda
- 3/4 teaspoon kosher salt
- Butter Pecan Frosting
- 2 sticks (16 tablespoons) salted butter, at room temperature
- 1/2 cup heavy cream
- 1 cup packed brown sugar
- 1 tablespoon vanilla extract
- 3 cups powdered sugar
Instructions
- Toast the Pecans for the Filling: Preheat oven to 350°F (175°C). Line a baking sheet with parchment paper. Combine pecans, bourbon, 1 teaspoon vanilla, 2 tablespoons brown sugar, and cinnamon. Bake 8-10 minutes until fragrant. Sprinkle with sea salt and roughly chop, reserving 22 whole pecans for topping.
- Make the Pecan Pie Filling: In a pot, whisk egg yolks, cornstarch, and 1 tablespoon water until smooth. Add 1/2 cup brown sugar, maple syrup, and a pinch of salt. Cook over medium-high heat, stirring, for 5-8 minutes until thickened. Strain into a heatproof bowl, stir in 1 cup chopped toasted pecans and 2 teaspoons vanilla. Chill for 1 hour.
- Prepare the Chocolate Bourbon Cupcakes: Preheat oven to 350°F (175°C). Line 20–22 cupcake molds with liners. In a stand mixer, beat coconut oil, bourbon, coffee or water, eggs, yogurt, and sugar until smooth. Add flour, cocoa powder, baking soda, and salt. Mix until lump-free. Divide batter among liners and bake 18–22 minutes. Cool completely.
- Make the Butter Pecan Frosting: In a saucepan, melt 4 tablespoons butter, cream, and brown sugar over medium heat. Bring to a boil and cook for 1 minute. Transfer to a mixing bowl and chill for 15–20 minutes. Add remaining butter, vanilla, and powdered sugar. Beat until creamy, then stir in 1/2–1 cup finely chopped toasted pecans.
- Assemble the Cupcakes: Cut a cone from the center of each cupcake. Fill with pecan pie filling. Frost with butter pecan frosting, sprinkle with chopped pecans, and top with a whole pecan.
Notes
If desired, replace bourbon with maple syrup for a non-alcoholic version. Store cupcakes refrigerated and bring to room temperature before serving for the best texture and flavor.
- Prep Time: 45 minutes
- Cook Time: 25 minutes
- Category: Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 cupcake
- Calories: 540
- Sugar: 40g
- Sodium: 220mg
- Fat: 32g
- Saturated Fat: 14g
- Unsaturated Fat: 15g
- Trans Fat: 0g
- Carbohydrates: 55g
- Fiber: 3g
- Protein: 6g
- Cholesterol: 75mg
Chocolate Bourbon Pecan Pie Cupcakes with Butter Pecan Frosting